PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G17180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 267aa    MW: 29362.9 Da    PI: 8.8931
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G17180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-1629125194
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                      f+k l+psd  ++  +l +p ++++++g        ++led++g             + W +++  +k+ g + ltkGW+ Fv+++gLk+gD++
  ONIVA02G17180.1  29 FEKFLMPSDLCSNtEWLGIPEEHVRKFG--------MMLEDRDGysviffqdgvvpgKLWCFRY--WKSNGVHGLTKGWRCFVREKGLKAGDTI 112
                      89*******9988799********9997........888888888888888889999*******..**************************** PP

                      EEEE-SSSEE..EE CS
               B3  81 vFkldgrsefelvv 94 
                       F + g+ +++l++
  ONIVA02G17180.1 113 SFFR-GSACGRLFI 125
                      *984.336665555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1824137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-1827126IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-1828128No hitNo description
PfamPF023623.3E-1329126IPR003340B3 DNA binding domain
SMARTSM010191.1E-729130IPR003340B3 DNA binding domain
PROSITE profilePS5086310.67330131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE  60
DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC  120
GRLFICCRLG TRATFASSST LHHGFSMPPP PARPLVGLES GMLARDVPSL GQARLHDGNQ  180
DGGGAPSRHV PSSGRHVEAQ LSRASSRRKR RTMKHSIPEP MIETPPILES MFLIAAPPAV  240
KCLRLFGVNI YVLPVSSSGQ PKQESSP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625111.10.0PREDICTED: B3 domain-containing protein Os02g0455800
SwissprotQ6K3B20.0Y2558_ORYSJ; B3 domain-containing protein Os02g0455800
TrEMBLA0A0E0G6A20.0A0A0E0G6A2_ORYNI; Uncharacterized protein
STRINGBGIOSGA008149-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.19e-20B3 family protein